Publications

2019

Guillot L, Delage L, Viari A, Vandenbrouck Y, Com E, Ritter A, Lavigne R, Marie D, Peterlongo P, Potin P, Pineau C. Peptimapper: proteogenomics workflow for the expert annotation of eukaryotic genomes. BMC Genomics 2019; 20(1):56. doi: 10.1186/s12864-019-5431-9.

Arsenieff L, Simon, N, Rigaut-Jalabert F, Le Gall F, Chaffron S, Corre E, Com E, Bigeard E, Baudoux A-C. First viruses infecting the marine diatom Guinardia delicatula. Frontiers in Microbiology. 2019; 9:3235. doi: 10.3389/fmicb.2018.03235.

2018

Lemée JM, Clavreul A, Aubry M, Com E, de Tayrac M, Mosser J, Menei P. Integration of transcriptome and proteome profiles in glioblastoma: looking for the missing link. BMC Mol Biol 2018; 19(1):13. doi: 10.1186/s12867-018-0115-6.

Dos Santos Morais R, Delalade O, Pérez J, Mias-Lucquin, Lagarrigue M, Martel A, Molza AE, Chéron A, Raguénès-Nicol C, Chenuel T, Bondon A, Appavou MS, Le Rumeur E, Combet S, Hubert JF.  Human Dystrophin Structural Changes upon Binding to Anionic Membrane Lipids. Biophys J. 2018; 115(7):1231-1239. doi: 10.1016/j.bpj.2018.07.039.

Melaine N, Com E, Bellaud P, Guillot L, Lagarrigue M, Morrice NA, Guével B, Lavigne R, Velez de la Calle JF, Dojahn J, Pineau C. Deciphering the dark proteome: use of the testis and characterization of two dark proteins. J Proteome Res. 2018; 17: 4197-4210. doi: 10.1021/acs.jproteome.8b00387.

Gondret F, Guével B, Père Mc, Quesnel H, Billon Y, Com E, Canario L, Louveau I, Liaubet L. Proteomic analysis of adipose tissue during the last weeks of gestation in pure and crossbred Large White or Meishan fetuses gestated by sows of either breed. Journal of Animal Science and Biotechnology, 2018; 9:28. doi: 10.1186/s40104-018-0244-2.

2017

Yilmaz O, Patinote A, Nguyen T, Com E, Lavigne R, Pineau C, Sullivan CV, Bobe J. Scrambled eggs: Proteomic portraits and novel biomarkers of egg quality in zebrafish (Danio rerio). PLoS One, 2017; 12(11):e0188084. doi: 10.1371/journal.pone.0188084.

Body S, Esteve-Arenys A, Miloudi H, Recassens-Zorzo C, Tchakarska G, Moros A, Bustany S, Vidal-Crespo A, Rodriguez V, Lavigne R, Com E, Casanova I, Mangues R, Weigert O, Sanjuan Pla A, Menendez P, Marcq B, Picquenot JM, Perez-Galan P, Jardin F, Roue G, Sola B. Cytoplasmic cyclin D1 controls migration and invasiveness of mantle lymphoma cells. Sci Rep, 2017; 7(1):13946. doi: 10.1038/s41598-017-14222-1.

Carapito C, Duek P, Macron C, Seffals M, Rondel K, Delalande F, Lindskog C, Freour T, Vandenbrouck Y, Lane L, Pineau C. Validating Missing Proteins in Human Sperm Cells by Targeted Mass-Spectrometry- and Antibody-based Methods. J Proteome Res. 2017; 16(12):4340-4351. doi: 10.1021/acs.jproteome.7b00374.

Colinet H, Pineau C, Com E. Large scale phosphoprotein profiling to explore Drosophila cold acclimation regulatory mechanisms. Sci Rep. 2017; 7(1): 1713. doi: 10.1038/s41598-017-01974-z. 

Becker E, Com E, Lavigne R, Guilleux Mh, Evrard B, Pineau C, Primig M. The protein expression landscape of mitosis and meiosis in diploid budding yeast. J Proteomics. 2017; 156: 5-19. doi: 10.1016/j.jprot.2016.12.016.

Palmer A, Phapale P, Chernyavsky I, Lavigne R, Fay D, Tarasov A, Kovalev V, Fuchser J, Nikolenko S, Pineau C, Becker M, Alexandrov T. FDR-controlled metabolite annotation for high-resolution imaging mass spectrometry. Nat Methods. 2017; 14(1): 57-60. doi: 10.1038/nmeth.4072.

2016

Vandenbrouk Y, Lane L, Carapito C, Duek P, Rondel K, Macron C, Bruley C, Gonzalez De Peredo A, Couté Y, Chaoui K, Com E, Gateau A, Hesse A-M, Marcellin M, Mear L, Mouton-Barbosa E, Robin T, Cianférani S, Burlet-Schiltz O, Ferro M, Fréour T, Lindskog C, Garin J, Pineau C. Looking for missing proteins in the proteome of human spermatozoa: an update. Journal of Proteome Research, 2016; 15(11):3998-4019. doi: 10.1021/acs.jproteome.6b00400.

Dietrich Y, Eliat Pa, Dieuset G, Saint-Jalmes H, Pineau C, Wendling F, Martin B. Structural and functional changes during epileptogenesis in the mouse model of medial temporal lobe epilepsy. Conf Proc IEEE Eng Med Biol Soc. 2016; 2016: 4005-4008. doi: 10.1109/EMBC.2016.7591605.

Lagarrigue M, Caprioli RM, Pineau C. Potential of MALDI imaging for the toxicological evaluation of environmental pollutants. J Proteomics. 2016; 144: 133-139. doi: 10.1016/j.jprot.2016.05.008.

Sakanyan V, Benaiteau F, Alves De Sousa R, Pineau C, Artaud I. Straightforward detection of reactive compound binding to multiple proteins in cancer cells: towards a better understanding of electrophilic stress. Annals of Clinical & Experimental Metabolism. 2016; 1(1): 1006.

Lardenois A, Jagot S, Lagarrigue M, Guevel B, Larcher T, Ledevin M, Dubreil L, Pineau C, Rouger K, Guevel L. Quantitative proteome profiling of dystrophic dog skeletal muscle reveals a global modification of structural protein composition after MuStem cell transplantation. Proteomics, 2016; 16(14):2028-42. doi: 10.1002/pmic.201600002.

Camus C, Matusali G, Bourry O, Mahe D, Aubry F, Bujan L, Pasquier C, Massip P, Ravel C, Zirafi O, Munch J, Roan Nr, Pineau C, Dejucq-Rainsford N. Comparison of the effect of semen from HIV-infected and uninfected men on CD4+ T cell infection. AIDS, 2016; 30(8):1197-208. doi: 10.1097/QAD.0000000000001048.

Sakanyan V, Hulin P, Alves De Sousa R, Silva Vao, Hambardzumyan A, Nedellec S, Tomasoni C, Loge C, Pineau C, Roussakis C, Fleury F, Artaud I. Activation of EGFR by small compounds through coupling the generation of hydrogen peroxide to stable dimerization of Cu/Zn SOD1. Sci Rep., 2016; 6:21088. doi: 10.1038/srep21088.

2015

Jumeau F, Com E, Lane L, Duek P, Lagarrigue M, Lavigne R, Guillot L, Rondel K, Gateau A, Melaine N, Guevel B, Sergeant N, Mitchell V, Pineau C. Human spermatozoa as a model for detecting missing proteins in the context of the chromosome-centric Human Proteome Project. Journal of Proteome Research, 2015; 14(9):3606-20. doi: 10.1021/acs.jproteome.5b00170.

Palmer A, Ovchinnikova E, Thune M, Lavigne R, Guevel B, Dyatlov A, Vitek O, Pineau C, Boren M, Alexandrov T. Using collective expert judgements to evaluate quality measures of mass spectrometry images. Bioinformatics, 2015; 31(12):i375-84. doi: 10.1093/bioinformatics/btv266.

Lemee JM, Clavreul A, Aubry M, Com E, De Tayrac M, Eliat PA, Henry C, Rousseau A, Mosser J, Menei P. Characterizing the Peritumoral Brain Zone in Glioblastoma: a Multidisciplinary Analysis. Journal of Neuro Oncology, 2015; 122(1):53-61. doi: 10.1007/s11060-014-1695-8.

Ben Maamar M, Lesné L, Desdoits-Lethimonier C, Coiffec I, Lassurguère J, Lavoué V, Deceuninck Y, Antignac Jp, Le Bizec B, Perdu E, Zalko D, Pineau C, Chevrier C, Dejucq-Rainsford N, Mazaud-Guittot S, Jégou B. An investigation of the endocrine-disruptive effects of bisphenol a in human and rat fetal testes. PLoS One. 2015;10 (2):e0117226. doi: 10.1371/journal.pone.0117226.

Becker E, Liu Y, Lardenois L, Walther T, Horecka J, Stuparevic I, Law M, Lavigne R, Evrard B, Demougin P, Riffle M, Strich R, Davis RW, Pineau P, Primig M. Integrated RNA- and protein profiling of fermentation and respiration in diploid budding yeast provides insight into nutrient control of cell growth and development. Journal of Proteomics, 2015; 119: 30-44. doi: 10.1016/j.jprot.2015.01.015.