Publications

2023

Yilmaz O, Com E, Pineau C, Bobe J. Genomic disturbance of vitellogenin 2 (vtg2) leads to vitellin membrane deficiencies and significant mortalities at early stages of embryonic development in zebrafish (Danio rerio). Sci Rep. 2023 Nov 1;13(1):18795. doi: 10.1038/s41598-023-46148-2. PMID: 37914813; PMCID: PMC10620220.

Dupoué A, Mello DF, Trevisan R, Dubreuil C, Queau I, Petton S, Huvet A, Guével B, Com E, Pernet F, Salin K, Fleury E, Corporeau C. Intertidal limits shape covariation between metabolic plasticity, oxidative stress and telomere dynamics in Pacific oyster (Crassostrea gigas). Mar Environ Res. 2023 Aug 18;191:106149. doi: 10.1016/j.marenvres.2023.106149. Epub ahead of print. PMID: 37611374.

Demay F, Hallier M, Georgeault S, Com E, Cattoir V, Goude R, Gillet R. Simple purification and characterization of soluble and homogenous ABC-F translation factors from Enterococcus faecium. Protein Expr Purif. 2023 Oct;210:106325. doi: 10.1016/j.pep.2023.106325. Epub 2023 Jun 22. PMID: 37354924.

Dochez-Arnault J, Desdoits-Lethimonier C, Matias I, Evrard B, Lagarrigue M, Toupin M, Lardenois A, Chalmel F, Mazaud-Guittot S, Dejucq-Rainsford N, Gely-Pernot A. Expression of the endocannabinoid system and response to cannabinoid components by the human fetal testis. BMC Med. 2023 Jul 11;21(1):219. doi: 10.1186/s12916-023-02916-5. PMID: 37430350; PMCID: PMC10334520.

Giudice E, Georgeault S, Lavigne R, Pineau C, Trautwetter A, Ermel G, Blanco C, Gillet R. Purification and Characterization of Authentic 30S Ribosomal Precursors Induced by Heat Shock. Int J Mol Sci. 2023 Feb 9;24(4):3491. doi: 10.3390/ijms24043491. PMID: 36834906; PMCID: PMC9959188.

Demini L, Kervarrec C, Guillot L, Com E, Lavigne R, Kernanec PY, Primig M, Pineau C, Petit FG, Jamin SP. Inactivation of Exosc10 in the oocyte impairs oocyte development and maturation, leading to a depletion of the ovarian reserve in mice. Int J Biol Sci. 2023 Jan 31;19(4):1080-1093. doi: 10.7150/ijbs.72889. PMID: 36923944; PMCID: PMC10008699.

Mahé C, Lavigne R, Com E, Pineau C, Zlotkowska AM, Tsikis G, Mermillod P, Schoen J, Saint-Dizier M. The sperm-interacting proteome in the bovine isthmus and ampulla during the periovulatory period. J Anim Sci Biotechnol. 2023 Feb 17;14(1):30. doi: 10.1186/s40104-022-00811-2. PMID: 36797800; PMCID: PMC9936689.

Risso V, Thomas M, Guével B, Lavigne R, Com E, Martin S, Nivet M, Pineau C, Negroni L, Lafont É, Chevet É, Eriksson LA, Le Gallo M. Metalloprotease-mediated cleavage of CD95 ligand. FEBS J. 2023 Jan 24. doi: 10.1111/febs.16737. Epub ahead of print. PMID: 36694998.

Girard O, Lavigne R, Chevolleau S, Onfray C, Com E, Schmit PO, Chapelle M, Fréour T, Lane L, David L, Pineau C. Naive Pluripotent and Trophoblastic Stem Cell Lines as a Model for Detecting Missing Proteins in the Context of the Chromosome-Centric Human Proteome Project. J Proteome Res. 2023 Apr 7;22(4):1148-1158. doi: 10.1021/acs.jproteome.2c00496. Epub 2022 Nov 29. PMID: 36445260.

 

2022

Banliat C, Mahe C, Lavigne R, Com E, Pineau C, Labas V, Guyonnet B, Mermillod P and Saint-Dizier M (2022) The proteomic analysis of bovine embryos developed in vivo or in vitro reveals the contribution of the maternal environment to early embryo. BMC Genomics 23:839. doi: 10.1186/s12864-022-09076-5

Girard O, Lavigne R, Chevolleau S, Onfray C, Com E, Schmit PO, Chapelle M, Freour T, Lane L, David L and Pineau C (2022) Naive Pluripotent and Trophoblastic Stem Cell Lines as a Model for Detecting Missing Proteins in the Context of the Chromosome-Centric Human Proteome Project. J Proteome Res. doi: 10.1021/acs.jproteome.2c00496

Le Faouder J, Arnaud B, Lavigne R, Lucas C, Com E, Bouvret E, Dinel AL and Pineau C (2022) Fish Hydrolysate Supplementation Prevents Stress-Induced Dysregulation of Hippocampal Proteins Relative to Mitochondrial Metabolism and the Neuronal Network in Mice. Foods 11. doi: 10.3390/foods11111591

Banliat C, Mahe C, Lavigne R, Com E, Pineau C, Labas V, Guyonnet B, Mermillod P and Saint-Dizier M (2022) Dynamic Changes in the Proteome of Early Bovine Embryos Developed In Vivo. Front Cell Dev Biol 10:863700. doi: 10.3389/fcell.2022.863700

Mahe C, Lavigne R, Com E, Pineau C, Locatelli Y, Zlotkowska AM, Alminana C, Tsikis G, Mermillod P, Schoen J and Saint-Dizier M (2022) Spatiotemporal profiling of the bovine oviduct fluid proteome around the time of ovulation. Sci Rep 12:4135. doi: 10.1038/s41598-022-07929-3

Mear L, Com E, Fathallah K, Guillot L, Lavigne R, Guevel B, Fauconnier A, Vialard F and Pineau C (2022) The Eutopic Endometrium Proteome in Endometriosis Reveals Candidate Markers and Molecular Mechanisms of Physiopathology. Diagnostics (Basel) 12. doi: 10.3390/diagnostics12020419

Lagarrigue M, Merdas M and Pineau C (2022) Chapter 16 MALDI Mass Spectrometry Imaging for Toxicological Evaluation of Environmental Pollutants.  MALDI Mass Spectrometry Imaging: From Fundamentals to Spatial Omics, The Royal Society of Chemistry,  pp. 387-407

Charpentier M, Dupré E, Fortun A, Briand F, Maillasson M, Com E, Pineau C, Labarrière N, Rabu C, Lang F. hnRNP-A1 binds to the IRES of MELOE-1 antigen to promote MELOE-1 translation in stressed melanoma cells. Mol Oncol. 2022 Feb;16(3):594-606. doi: 10.1002/1878-0261.13088. Epub 2021 Sep 12. PMID: 34418284; PMCID: PMC8807352.

 

2021

Merdas M, Lagarrigue M, Umbdenstock T, Lhumeau A, Dartiguelongue F, Vanbellingen Q, Da Violante G, Pineau C. Study of the Distribution of Acetaminophen and Its Metabolites in Rats, from the Whole-Body to Isolated Organ Levels, by Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry Imaging after On-Tissue Chemical Derivatization. Anal Chem. 2021 Oct 5;93(39):13242-13250. doi: 10.1021/acs.analchem.1c02487. Epub 2021 Sep 21. PMID: 34546718.

Merdas M, Lagarrigue M, Vanbellingen Q, Umbdenstock T, Da Violante G, Pineau C. On-tissue chemical derivatization reagents for matrix-assisted laser desorption/ionization mass spectrometry imaging. J Mass Spectrom. 2021 Apr 20:e4731. doi: 10.1002/jms.4731.

Yilmaz O, Com E, Lavigne R, Pineau C, Bobe J. Liquid Chromatography and Tandem Mass Spectrometry in Label-Free Protein Quantification of Zebrafish (Danio rerio) Eggs. Methods Mol Biol. 2021;2218:277-290. doi: 10.1007/978-1-0716-0970-5_22.
 
Yilmaz O, Patinote A, Com E, Pineau C, Bobe J. Knock out of specific maternal vitellogenins in zebrafish (Danio rerio) evokes vital changes in egg proteomic profiles that resemble the phenotype of poor-quality eggs. BMC Genomics. 2021 Apr 28;22(1):308. doi: 10.1186/s12864-021-07606-1.
 
Simoes Eugénio M, Faurez F, Kara-Ali GH, Lagarrigue M, Uhart P, Bonnet MC, Gallais I, Com E, Pineau C, Samson M, Le Seyec J, Dimanche-Boitrel MT. TRIM21, a New Component of the TRAIL-Induced Endogenous Necrosome Complex. Front Mol Biosci. 2021 Apr 15;8:645134. doi: 10.3389/fmolb.2021.645134.
 
Thys A, Trillet K, Rosińska S, Gayraud A, Douanne T, Danger Y, Renaud CCN, Antigny L, Lavigne R, Pineau C, Com E, Vérité F, Gavard J, Bidère N. Serine 165 phosphorylation of SHARPIN regulates the activation of NF-κB. iScience. 2020 Dec 13;24(1):101939. doi: 10.1016/j.isci.2020.101939. PMID: 33392484; PMCID: PMC7773595.

 

 
2020
 
Vandenbrouck Y, Pineau C, Lane L. The Functionally Unannotated Proteome of Human Male Tissues: A Shared Resource to Uncover New Protein Functions Associated with Reproductive Biology. J Proteome Res. 2020 Dec 4;19(12):4782-4794. doi: 10.1021/acs.jproteome.0c00516.
 
Adhikari S, Nice EC, Deutsch EW, Lane L, Omenn GS, Pennington SR, Paik YK, Overall CM, Corrales FJ, Cristea IM, Van Eyk JE, Uhlén M, Lindskog C, Chan DW, Bairoch A, Waddington JC, Justice JL, LaBaer J, Rodriguez H, He F, Kostrzewa M, Ping P, Gundry RL, Stewart P, Srivastava S, Srivastava S, Nogueira FCS, Domont GB, Vandenbrouck Y, Lam MPY, Wennersten S, Vizcaino JA, Wilkins M, Schwenk JM, Lundberg E, Bandeira N, Marko-Varga G, Weintraub ST, Pineau C, Kusebauch U, Moritz RL, Ahn SB, Palmblad M, Snyder MP, Aebersold R, Baker MS. A high-stringency blueprint of the human proteome. Nat Commun. 2020 Oct 16;11(1):5301. doi: 10.1038/s41467-020-19045-9.

 

Lagarrigue M, Lavigne R, Guével B, Palmer A, Rondel K, Guillot L, Kobarg JH, Trede D, Pineau C. Spatial segmentation and metabolite annotation involved in sperm maturation in the rat epididymis by MALDI imaging mass spectrometry. J Mass Spectrom. 2020. e4633 doi: 10.1002/jms.4633

Mias-Lucquin D, Dos Santos Morais R, Chéron A, Lagarrigue M, Winder SJ, Chenuel T, Pérez J, Appavou MS, Martel A, Alviset G, Le Rumeur E, Combet S, Hubert JF, Delalande O. How the central domain of dystrophin acts to bridge F-actin to sarcolemmal lipids. J Struct Biol. 2020 Jan 1;209(1):107411. doi: 10.1016/j.jsb.2019.107411.

Macron C, Lavigne R, Núñez Galindo A, Affolter M, Pineau C, Dayon L. Exploration of human cerebrospinal fluid: A large proteome dataset revealed by trapped ion mobility time-of-flight mass spectrometry. Data Brief. 2020 May 16;31:105704. doi: 10.1016/j.dib.2020.105704. PMID: 32478154; PMCID: PMC7251648.

Banliat C, Tsikis G, Labas V, Teixeira-Gomes AP, Com E, Lavigne R, Pineau C, Guyonnet B, Mermillod P, Saint-Dizier M. Identification of 56 Proteins Involved in Embryo-Maternal Interactions in the Bovine Oviduct. Int J Mol Sci. 2020 Jan 11;21(2):466. doi: 10.3390/ijms21020466. PMID: 31940782; PMCID: PMC7013689.

 

2019

Deutsch EW, Lane L, Overall CM, Bandeira N, Baker MS, Pineau C, Moritz RL, Corrales F, Orchard S, Van Eyk JE, Paik YK, Weintraub ST, Vandenbrouck Y, Omenn GS. Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0. J Proteome Res. 2019 Oct 21. doi: 10.1021/acs.jproteome.9b00542.

Corbière A, Vaudry H, Chan P, Walet-Balieu ML, Lecroq T, Lefebvre A, Pineau C, Vaudry D. Strategies for the Identification of Bioactive Neuropeptides in Vertebrates. Front Neurosci. 2019; 13:948. doi: 10.3389/fnins.2019.00948.

Pineau C, Hikmet F, Zhang C, Oksvold P, Chen S, Fagerberg L, Uhlén M, Lindskog C. Cell Type-Specific Expression of Testis Elevated Genes Based on Transcriptomics and Antibody-Based Proteomics. J Proteome Res. 2019 Aug 29. doi: 10.1021/acs.jproteome.9b00351.

Yilmaz O, Patinote A, Nguyen T, Com E, Pineau C, Bobe J. Genome editing reveals reproductive and developmental dependencies on specific types of vitellogenin in zebrafish (Danio rerio). Molecular Reproduction and Development 2019; 86(9):1168-1188.

Mizuno CM, Guyomar C, Roux S, Lavigne R, Rodriguez-Valera F, Sullivan MB, Gillet R, Forterre P, Krupovic M. Numerous cultivated and uncultivated viruses encode ribosomal proteins. Nat Commun. 10(1):752. doi: 10.1038/s41467-019-08672-6

Guillot L, Delage L, Viari A, Vandenbrouck Y, Com E, Ritter A, Lavigne R, Marie D, Peterlongo P, Potin P, Pineau C. Peptimapper: proteogenomics workflow for the expert annotation of eukaryotic genomes. BMC Genomics 2019; 20(1):56. doi: 10.1186/s12864-019-5431-9

Arsenieff L, Simon, N, Rigaut-Jalabert F, Le Gall F, Chaffron S, Corre E, Com E, Bigeard E, Baudoux A-C. First viruses infecting the marine diatom Guinardia delicatula. Frontiers in Microbiology, section Aquatic Microbiology 2019; 9:3235. doi: 10.3389/fmicb.2018.03235

 

2018

Lemée JM, Clavreul A, Aubry M, Com E, de Tayrac M, Mosser J, Menei P. Integration of transcriptome and proteome profiles in glioblastoma: looking for the missing link. BMC Mol Biol 2018; 19(1):13. doi: 10.1186/s12867-018-0115-6.

Dos Santos Morais R, Delalade O, Pérez J, Mias-Lucquin, Lagarrigue M, Martel A, Molza AE, Chéron A, Raguénès-Nicol C, Chenuel T, Bondon A, Appavou MS, Le Rumeur E, Combet S, Hubert JF. Human Dystrophin Structural Changes upon Binding to Anionic Membrane Lipids. Biophys J. 2018; 115(7):1231-1239. doi: 10.1016/j.bpj.2018.07.039.

Melaine N, Com E, Bellaud P, Guillot L, Lagarrigue M, Morrice NA, Guével B, Lavigne R, Velez de la Calle JF, Dojahn J, Pineau C. Deciphering the dark proteome: use of the testis and characterization of two dark proteins. J Proteome Res. 2018; 17: 4197-4210. doi: 10.1021/acs.jproteome.8b00387.

Gondret F, Guével B, Père Mc, Quesnel H, Billon Y, Com E, Canario L, Louveau I, Liaubet L. Proteomic analysis of adipose tissue during the last weeks of gestation in pure and crossbred Large White or Meishan fetuses gestated by sows of either breed. Journal of Animal Science and Biotechnology, 2018; 9:28. doi: 10.1186/s40104-018-0244-2.

Yilmaz O, Patinote A, Nguyen T, Bobe J. Multiple vitellogenins in zebrafish (Danio rerio): quantitative inventory of genes, transcripts and proteins, and relation to egg quality. Fish Physiol Biochem. 2018 Dec;44(6):1509-1525. doi: 10.1007/s10695-018-0524-y. Epub 2018 Jun 7. PMID: 29882000.

 

2017

Yilmaz O, Patinote A, Nguyen T, Com E, Lavigne R, Pineau C, Sullivan CV, Bobe J. Scrambled eggs: Proteomic portraits and novel biomarkers of egg quality in zebrafish (Danio rerio). PLoS One, 2017; 12(11):e0188084. doi: 10.1371/journal.pone.0188084.

Body S, Esteve-Arenys A, Miloudi H, Recassens-Zorzo C, Tchakarska G, Moros A, Bustany S, Vidal-Crespo A, Rodriguez V, Lavigne R, Com E, Casanova I, Mangues R, Weigert O, Sanjuan Pla A, Menendez P, Marcq B, Picquenot JM, Perez-Galan P, Jardin F, Roue G, Sola B. Cytoplasmic cyclin D1 controls migration and invasiveness of mantle lymphoma cells. Sci Rep, 2017; 7(1):13946. doi: 10.1038/s41598-017-14222-1.

Carapito C, Duek P, Macron C, Seffals M, Rondel K, Delalande F, Lindskog C, Freour T, Vandenbrouck Y, Lane L, Pineau C. Validating Missing Proteins in Human Sperm Cells by Targeted Mass-Spectrometry- and Antibody-based Methods. J Proteome Res. 2017; 16(12):4340-4351. doi: 10.1021/acs.jproteome.7b00374.

Colinet H, Pineau C, Com E. Large scale phosphoprotein profiling to explore Drosophila cold acclimation regulatory mechanisms. Sci Rep. 2017; 7(1): 1713. doi: 10.1038/s41598-017-01974-z.

Becker E, Com E, Lavigne R, Guilleux Mh, Evrard B, Pineau C, Primig M. The protein expression landscape of mitosis and meiosis in diploid budding yeast. J Proteomics. 2017; 156: 5-19. doi: 10.1016/j.jprot.2016.12.016.

Palmer A, Phapale P, Chernyavsky I, Lavigne R, Fay D, Tarasov A, Kovalev V, Fuchser J, Nikolenko S, Pineau C, Becker M, Alexandrov T. FDR-controlled metabolite annotation for high-resolution imaging mass spectrometry. Nat Methods. 2017; 14(1): 57-60. doi: 10.1038/nmeth.4072.

2016

Vandenbrouck Y, Lane L, Carapito C, Duek P, Rondel K, Macron C, Bruley C, Gonzalez De Peredo A, Couté Y, Chaoui K, Com E, Gateau A, Hesse A-M, Marcellin M, Mear L, Mouton-Barbosa E, Robin T, Cianférani S, Burlet-Schiltz O, Ferro M, Fréour T, Lindskog C, Garin J, Pineau C. Looking for missing proteins in the proteome of human spermatozoa: an update. Journal of Proteome Research, 2016; 15(11):3998-4019. doi: 10.1021/acs.jproteome.6b00400.

Dietrich Y, Eliat Pa, Dieuset G, Saint-Jalmes H, Pineau C, Wendling F, Martin B. Structural and functional changes during epileptogenesis in the mouse model of medial temporal lobe epilepsy. Conf Proc IEEE Eng Med Biol Soc. 2016; 2016: 4005-4008. doi: 10.1109/EMBC.2016.7591605.

Lagarrigue M, Caprioli RM, Pineau C. Potential of MALDI imaging for the toxicological evaluation of environmental pollutants. J Proteomics. 2016; 144: 133-139. doi: 10.1016/j.jprot.2016.05.008.

Sakanyan V, Benaiteau F, Alves De Sousa R, Pineau C, Artaud I. Straightforward detection of reactive compound binding to multiple proteins in cancer cells: towards a better understanding of electrophilic stress. Annals of Clinical & Experimental Metabolism. 2016; 1(1): 1006.

Lardenois A, Jagot S, Lagarrigue M, Guevel B, Larcher T, Ledevin M, Dubreil L, Pineau C, Rouger K, Guevel L. Quantitative proteome profiling of dystrophic dog skeletal muscle reveals a global modification of structural protein composition after MuStem cell transplantation. Proteomics, 2016; 16(14):2028-42. doi: 10.1002/pmic.201600002.

Camus C, Matusali G, Bourry O, Mahe D, Aubry F, Bujan L, Pasquier C, Massip P, Ravel C, Zirafi O, Munch J, Roan Nr, Pineau C, Dejucq-Rainsford N. Comparison of the effect of semen from HIV-infected and uninfected men on CD4+ T cell infection. AIDS, 2016; 30(8):1197-208. doi: 10.1097/QAD.0000000000001048.

Sakanyan V, Hulin P, Alves De Sousa R, Silva Vao, Hambardzumyan A, Nedellec S, Tomasoni C, Loge C, Pineau C, Roussakis C, Fleury F, Artaud I. Activation of EGFR by small compounds through coupling the generation of hydrogen peroxide to stable dimerization of Cu/Zn SOD1. Sci Rep., 2016; 6:21088. doi: 10.1038/srep21088.

2015

Jumeau F, Com E, Lane L, Duek P, Lagarrigue M, Lavigne R, Guillot L, Rondel K, Gateau A, Melaine N, Guevel B, Sergeant N, Mitchell V, Pineau C. Human spermatozoa as a model for detecting missing proteins in the context of the chromosome-centric Human Proteome Project. Journal of Proteome Research, 2015; 14(9):3606-20. doi: 10.1021/acs.jproteome.5b00170.

Palmer A, Ovchinnikova E, Thune M, Lavigne R, Guevel B, Dyatlov A, Vitek O, Pineau C, Boren M, Alexandrov T. Using collective expert judgements to evaluate quality measures of mass spectrometry images. Bioinformatics, 2015; 31(12):i375-84. doi: 10.1093/bioinformatics/btv266.

Lemee JM, Clavreul A, Aubry M, Com E, De Tayrac M, Eliat PA, Henry C, Rousseau A, Mosser J, Menei P. Characterizing the Peritumoral Brain Zone in Glioblastoma: a Multidisciplinary Analysis. Journal of Neuro Oncology, 2015; 122(1):53-61. doi: 10.1007/s11060-014-1695-8.

Ben Maamar M, Lesné L, Desdoits-Lethimonier C, Coiffec I, Lassurguère J, Lavoué V, Deceuninck Y, Antignac Jp, Le Bizec B, Perdu E, Zalko D, Pineau C, Chevrier C, Dejucq-Rainsford N, Mazaud-Guittot S, Jégou B. An investigation of the endocrine-disruptive effects of bisphenol a in human and rat fetal testes. PLoS One. 2015;10 (2):e0117226. doi: 10.1371/journal.pone.0117226.

Becker E, Liu Y, Lardenois L, Walther T, Horecka J, Stuparevic I, Law M, Lavigne R, Evrard B, Demougin P, Riffle M, Strich R, Davis RW, Pineau P, Primig M. Integrated RNA- and protein profiling of fermentation and respiration in diploid budding yeast provides insight into nutrient control of cell growth and development. Journal of Proteomics, 2015; 119: 30-44. doi: 10.1016/j.jprot.2015.01.015.